Statistical Methodology

• Kormaksson, Booth, Figueroa and Melnick (2012) "Integrative model-based clustering of microarray methylation and expression data". Annals of Applied Statistics., 6(3):1327-1347.
  
  
• Bar, Booth and Wells (2012), "A mixture model approach for parallel testing for unequal variances". Statistical Applications in Genetics and Molecular Biology, 11(1) Article 8.
  
  
• Cunningham and Booth (2011), "A Bayesian approach to analysis of covariance in balanced randomized block experiments". Journal of Statistical Computation and Simulation, 81(11):1449-1460.
  
  
• Bar, Booth, Schifano and Wells (2010), "Laplace approximated EM Microarray Analysis: an empirical Bayes approach for comparative microarray experiments". Statistical Science 25(3):388-407. Link to LEMMA package is here.
  
  
• Booth, Federer, Wells and Wolfinger (2009), "A multivariate variance component model for analysis of covariance in designed experiments", Statistical Science 24(2):223-237.
  
  
• Zipunnikov, Booth and Yoshida (2009), "Counting tables using the double saddlepoint approximation". Journal of Computational and Graphical Statistics 18(4):915-929.
  
  
• Butler, Sutton, Booth and Ohman-Strickland (2008), "Simulation-assisted saddlepoint approximation", Journal of Statistical Computation and Simulation, 79(8):731-745.
  
  
• Booth, Casella and Hobert (2008), "Clustering using objective functions and stochastic search", Journal of the Royal Statistical Society B 70(1):119-140.
  
  
• Hitchcock, Booth and Casella (2007), "The effect of pre-smoothing functional data on cluster analysis", Journal of Statistical Computation and Simulation, 77(12):1043-1055.
  
  
• Hitchcock, Casella and Booth (2006), "Improved estimation of dissimilarities by smoothing functional data", Journal of the American Statistical Association, 101(473):211-222.
  
  
• Booth, Capanu and Heigenhauser (2005), "Exact conditional p-value calculation for the quasi-symmetry model", Journal of Computational and Graphical Statistics, 15(3):716-725.
  
  

Applications

• Eilertson, Booth, Bustamante (2012) "SnIPRE: Selection inference using a Poisson random effects model" PLoS Computational Biology 8(12): e1002806. doi:10.1371/journal.pcbi.1002806.
  
  
• Hirschl, Booth, Glenna and Green (2012), "Politics, religion, and society: Is the United States experiencing a period of religious-political polarization?", Review of European Studies 4(4) (Aug 3, 2012 Epub ahead of print). Data for the RES paper can be found here.
  
  
• Rosenbaum, Bar, Beg, Segrč, Booth, Cotta and Angenent (2012), "Transcriptional analysis of Shewanella oneidensis MR-1 with an electrode compared to Fe(III)citrate or oxygen as terminal electron acceptor", PLoS ONE 7(2):e30827.
  
  
• Booth, Eilertson, Olinares and Yu (2011), "A Bayesian mixture model for comparative spectral count data in shotgun proteomics". Molecular and Cellular Proteomics 10(8):M110.007203. Data analyzed in this paper can be found here.
  
  
• Rosenbaum, Bar, Beg, Segrè, Booth, Cotta and Angenent (2011), "Shewanella oneidensis in a lactate-fed pure-culture and a glucose-fed co-culture with Lactococcuslactis with an electrode as electron acceptor". Bioresource Technology 102(3):2623-2628 (Oct 12, 2010 Epub ahead of print).
  
  
• Figueroa, Lugfhart, Li, Erpelnick-Verschueren, Deng, Christos, Schifano, Booth, van Putten, Skrabenek, Campagne, Mazumdar, Greally, Valk, Lowenberg, Delwel and Melnick (2010), ``DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia'', Cancer Cell 07 January.
  
  
• Hirschl, Booth and Glenna (2009), "The link between voter choice and religious identity in contemporary society: bringing classical theory back in", Social Science Quarterly 90(4):927-944. Data for the SSQ paper can be found here
  
  
• Holloway, Booth, Edelmann, McGowan, Cohen (2008), "MUS81 generates a subset of MLH1-MLH3-independent crossovers in mammalian meiosis", PLoS Genetics 4(9): e1000186. doi:10.1371/journal.pgen.1000186.
  
  
• Davis, Lewenstein, Simon, Booth, Connolly (2008), "Open access publishing, article downloads, and citations: randomised controlled trial", BMJ 2008;337:a568.
  
  
• Joo, Booth, Namkoong, and Casella (2008), "Model-based Bayesian clustering (MBBC)", Bioinformatics, 15 March 2008; 24: 874-875.
  
  
• Brooks, MacNguyen, Hall, Gupta and Booth, "Indirect Carrier Detection of Canine Hemophilia A Using Factor VIII Microsatellite Markers", Animal Genetics, June 2008, 39:306-309.
  
  
• Kim, Booth, Gauch, Sun, Park, Lee and Lee, "Simple Sequence Repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference", BMC Genomics 2008, 9:31.
  
  
• Michael, Park, Kim, Booth, Byer, Sun, Chory, Lee (2007), "Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock", PLoS ONE 2(8): e795.
  
  
• Joo, Casella, Booth, Lee and Enkemann (2007), "Normalization of Dye Bias in Microarray Data Using the Mixture of Splines Model", Statistical Applications in Genetics and Molecular Biology, Vol. 6, Iss. 1, Art. 2.